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Series GSE56288 Query DataSets for GSE56288
Status Public on Oct 12, 2015
Title Androgen receptor programming in human tissue implicates HOXB13 in prostate pathogenesis [ChIP-Seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The androgen receptor (AR), a nuclear transcription factor (TF), is consistently reprogrammed during prostate tumorigenesis
Overall design Mapping AR binding sites in patient prostate tumor and normal tissues
Contributor(s) Pomerantz MM, Li F, Takeda D, Chonkar A, Chabot M, Li Q, Cejas P, Vazquez F, Shivdasani RA, Seo J, Bowden M, Lis R, Hahn WC, Kantoff PW, Brown M, Loda M, Long HW, Freedman ML
Citation(s) 26457646
Submission date Mar 27, 2014
Last update date May 15, 2019
Contact name Fugen Li
Organization name Dana-Farber Cancer Institute
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
Platforms (3)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (29)
GSM1358395 Patient prostate normal tissue 1
GSM1358396 Patient AR prostate tumor tissue 2
GSM1358397 Patient prostate normal tissue 3
This SubSeries is part of SuperSeries:
GSE70079 Androgen receptor programming in human tissue implicates HOXB13 in prostate pathogenesis
BioProject PRJNA242853
SRA SRP040649

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56288_RAW.tar 5.9 Gb (http)(custom) TAR (of BED, BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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