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| Status |
Public on Jan 24, 2015 |
| Title |
Transcriptome of wild-type and G9a mutant upon viral challenge |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The aim of the study was to generate transcriptome of wild-type and G9a mutant adult flies (females) 24h post-infection with Drosophila C Virus (DCV).
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| Overall design |
We generated 8 different data sets. For wild-type controls and G9a mutants, we performed both mock and DCV infection, and collected both whole flies and fat bodies. All flies were 3-5 days old females.
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| Contributor(s) |
van Rij RP, Merkling SH |
| Citation(s) |
25880195 |
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| Submission date |
Mar 18, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ronald van Rij |
| E-mail(s) |
R.vanRij@ncmls.ru.nl, ronald.vanrij@radboudumc.nl
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| Organization name |
Radboud Institute for Molecular Life Sciences - Radboud University Medical Center
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| Street address |
Geert Grooteplein 28
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| City |
Nijmegen |
| ZIP/Postal code |
6525 GA |
| Country |
Netherlands |
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| Platforms (1) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
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| Samples (8)
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| GSM1350412 |
G9a mutant (G9a-/-), Mock, Fat Body |
| GSM1350413 |
Wild-type (G9a+/+), DCV, Whole Fly |
| GSM1350414 |
G9a mutant (G9a-/-), DCV, Whole Fly |
| GSM1350415 |
Wild-type (G9a+/+), DCV, Fat Body |
| GSM1350416 |
G9a mutant (G9a-/-), DCV, Fat Body |
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| Relations |
| BioProject |
PRJNA242271 |
| SRA |
SRP040306 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz |
759.5 Kb |
(ftp)(http) |
TXT |
| GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz |
749.9 Kb |
(ftp)(http) |
TXT |
| GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz |
744.9 Kb |
(ftp)(http) |
TXT |
| GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz |
721.7 Kb |
(ftp)(http) |
TXT |
| GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz |
726.2 Kb |
(ftp)(http) |
TXT |
| GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz |
718.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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