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Series GSE53736 Query DataSets for GSE53736
Status Public on Jan 23, 2014
Title Cistrome profiles of Retinoids x Receptor alpha (RXRα) , Retinoic Acid Receptor alpha (RARα), and Retinoic Acid Receptor beta (RARβ) in livers of mice treated by control and retionic acid-containing diet
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Comparison between ChIP-Seq data of RARα and RARβ, between RAR and RXR, as well as between control and retinoic acid-treatment for each investigated nuclear receptors.
 
Overall design Mouse were treated by control diet and RA-diet for 1 days. After treatment, livers were used to do ChIP using antibodies of RXRα, RARα, and RARβ. An aliquote of total chromatin without pull-down process by any antibodies was used as input control. A single-end read of 35bp sequencing was performed on each of ChIPed DNA and input. Sequencing data of RARα and RARβ were compared to each other. In addtional, each of RARα and RARβ data were compared with RXRα data. For each nuclear receptor, ChIP-Seq data prior or after RA-treatment were also compared with each other.
 
Contributor(s) Wan Y, He Y, Zhan Q, Lu Y, Liu H
Citation(s) 23981290, 24833708
Submission date Dec 31, 2013
Last update date Aug 16, 2019
Contact name Yuqi He
E-mail(s) hyqjeff@gmail.com
Organization name UC Davis Medical Center
Street address Rm3400, Research III, UC Davis Medical Center, 4645 2nd Ave
City Sacramento
State/province California
ZIP/Postal code 95817
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (7)
GSM1299598 RARa binding in the control group
GSM1299599 RARb binding in the control group
GSM1299600 RXRa binding in the control group
Relations
BioProject PRJNA232748
SRA SRP034854

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53736_RAW.tar 3.4 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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