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Status |
Public on Dec 21, 2013 |
Title |
HP1_8-16-seq |
Project |
modENCODE
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Organism |
Drosophila melanogaster |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
modENCODE_submission_4091 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The White Lab is aiming to map the association of many of the non-histone chromosomal proteins on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested chromatin-binding protein. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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Overall design |
EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: Embryo 8-16h; Genotype: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]; EXPERIMENTAL FACTORS: Developmental Stage Embryo 8-16h; Strain Y cn bw sp; Antibody HP1 antibody (ab24726) (target is HP1)
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Web link |
http://www.modencode.org
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Contributor(s) |
White K, Ma L, Slattery M |
Citation missing |
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BioProject |
PRJNA63467 |
Submission date |
Dec 20, 2013 |
Last update date |
May 15, 2019 |
Contact name |
DCC modENCODE |
E-mail(s) |
help@modencode.org
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Phone |
416-673-8579
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Organization name |
Ontario Institute for Cancer Research
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Lab |
modENCODE DCC
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Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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City |
Toronto |
State/province |
Ontario |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
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Platforms (1) |
GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
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Samples (3) |
GSM1296153 |
HP1 8-16h embryonic D.melanogaster Input |
GSM1296154 |
HP1 8-16h embryonic D.melanogaster ChIP Rep1 |
GSM1296155 |
HP1 8-16h embryonic D.melanogaster ChIP Rep2 |
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