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Series GSE53475 Query DataSets for GSE53475
Status Public on Dec 19, 2013
Title Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots
Platform organism Populus trichocarpa
Sample organisms Populus tremula x Populus tremuloides; Populus tremula x Populus alba
Experiment type Expression profiling by array
Summary The Poplar transcriptome was analyzed in mycorrhizal root tips in contact with Laccaria bicolor for 2 weeks. During mycorrhization the roots were treated with either 250µm ACC, 10nM JA or 500µM SA and compared to untreated mycorrhiza or control roots without contact to L. bicolor. In addition the poplar mutants 35S::PttACO1 and 35S::Atetr1 were used
Overall design We performed 27 hybridizations (NimbleGen) with samples derived from Populus tremula x Populus alba clone 717-1B4 control roots, untreated mycorrhiza, SA-treated mycorrhiza, ACC-treated mycorrhiza and JA-treated mycorrhiza (3 biological replicates each) as well as Populus tremula x Populus tremuloides T89 control roots, mycorrhiza, 35S::PttACO1 mycorrhiza and 35S::Atetr1-1 mycorrhiza (3 biological replicates). All samples were labeled with Cy3.
Contributor(s) Plett JM, Kohler A, Martin F
Citation(s) 24847068
Submission date Dec 18, 2013
Last update date Jun 02, 2014
Contact name Annegret Kohler
Phone +33 (0)383 394072
Organization name INRA
Department UMR 1136
Lab Interactions Arbres/Micro-organismes
Street address Centre INRA de Nancy
City Champenoux
ZIP/Postal code 54280
Country France
Platforms (1)
GPL13485 Populus trichocarpa 12-plex whole genome expression array
Samples (27)
GSM1294294 T89-CON-1
GSM1294295 T89-CON-2
GSM1294296 T89-CON-3
This SubSeries is part of SuperSeries:
GSE56865 Effect of Laccaria bicolor, MiSSP7 from L.bicolor and Jasmonic acid on the Poplar transcriptome
BioProject PRJNA232077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53475_RAW.tar 91.6 Mb (http)(custom) TAR (of PAIR, TXT)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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