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Series GSE53372 Query DataSets for GSE53372
Status Public on Dec 11, 2015
Title Chromatin immunoprecipitation-sequencing of HEK293 cells (HEK293-HPT-blue) and HEK293 cells stably over-expressing the BAHD1 gene (HEK293-HPT-BAHD1)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the genomic occupancy of the BAHD1 protein in HEK293 cells over-expressing the BAHD1 gene (HEK293-HPT-BAHD1)
 
Overall design We used Native ChIP-seq to identify DNA regions bound to BAHD1 (native ChIP involves use of native chromatin before precipitation of immune complexes, without formaldehyde crosslinking of proteins with nucleic acids)
 
Contributor(s) Lebreton A, Libertini E, Lakisic G, Coppee J, Bierne H
Citation(s) 26648976
Submission date Dec 16, 2013
Last update date May 15, 2019
Contact name Helene Bierne
E-mail(s) helene.bierne@inra.fr
Phone 33134652289
Organization name INRA
Department Micalis Institute
Lab EPIMIC
Street address Domaine de Vilvert, bat 442, INRA Micalis
City Jouy-en-Josas
ZIP/Postal code 78350
Country France
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (7)
GSM1290241 HPT.BAHD1.ChIPSeq.R1.ChIP
GSM1290242 HPT.BAHD1.ChIPSeq.R1.Input
GSM1290243 HPT.BAHD1.ChIPSeq.R2.a.ChIP
This SubSeries is part of SuperSeries:
GSE51868 HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1)
Relations
BioProject PRJNA231861
SRA SRP034529

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53372_RAW.tar 530.3 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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