|
| Status |
Public on Jan 01, 2016 |
| Title |
Transcriptomic analysis of Plasmodium PBANKA, PBSLTRiP-KO, PB268-KO parasite infected and uninfected host cell |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Liver stage of malaria parasite exports SLTRiP and PB268 to the cytosol of parasite infected host cell. To know the host genes perturbed by WT-PBANKA, SLTRiP-KO and PB268-KO parasite growth, we did transcriptomic sequencing of infected host cells. We did mRNA sequencing of four samples for comparative analysis of WT and PB-knockout parasites infected host cells at 22 hours of post sporozoites infection.
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| |
|
| Overall design |
mRNA profiles of Plasmodium PBANKA, PBSLTRiP-KO, PB268-KO parasite infected and uninfected HepG2 cells after 22hrs of sporozoites infections were generated by deep sequencing using Illumina GAIIx.
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| |
|
| Contributor(s) |
Jaijyan DK, Pandit A, Singh AP |
| Citation(s) |
25960542 |
| |
| Submission date |
Dec 13, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Agam Prasad Singh |
| E-mail(s) |
singhap@nii.ac.in
|
| Organization name |
NII
|
| Department |
IDL
|
| Lab |
IDL
|
| Street address |
Aruna Asaf Ali Marg
|
| City |
New Delhi |
| State/province |
Delhi |
| ZIP/Postal code |
110067 |
| Country |
India |
| |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (4)
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|
| Relations |
| BioProject |
PRJNA231615 |
| SRA |
SRP034011 |
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