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Series GSE51610 Query DataSets for GSE51610
Status Public on Jan 01, 2016
Title Defining principles of gene and regulatory element imprinting in mouse trophoblast stem cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary An undefined number of mammalian genes are expressed preferentially from one parental allele, in a process termed genomic imprinting. To shed light on the general principles of this process in a single cell type, we profiled allelic gene expression, DNaseI hypersensitivity (DHS), and CTCF binding in genetically defined murine trophoblast stem cells (TSCs). The data deposited in this entry are from CTCF ChIP-Seq and DNase-Seq experiments performed in the BC.1 cell line. All other data has been previously deposited as part of GEO Series GSE39406.
Overall design The F1 TSC line profiled was generated from a cross between a C57BL/6J (B6) female and CAST/EiJ (Cast) male mouse.
Contributor(s) Calabrese JM
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Submission date Oct 23, 2013
Last update date May 15, 2019
Contact name J Mauro Calabrese
Phone 919-843-3257
Organization name UNC-Chapel Hill
Department Pharmacology
Street address 120 Mason Farm Road
City Chapel Hill
State/province NC
ZIP/Postal code 27516
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM1249151 F1 TSC Dnase-Seq
GSM1249152 F1 TSC CTCF ChIP-Seq
BioProject PRJNA224074
SRA SRP031859

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51610_RAW.tar 3.0 Gb (http)(custom) TAR (of BED, TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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