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| Status |
Public on Jul 27, 2014 |
| Title |
Role of TTF-1/NKX2-1, Smad3 and Smad4 on lung cancer cell lines |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
25060702 |
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| Submission date |
Oct 21, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Daizo Koinuma |
| E-mail(s) |
d-koinuma@umin.ac.jp
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| Organization name |
University of Tokyo
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| Department |
Pathology
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| Street address |
Hongo 7-3-1, Bunkyo-ku
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| City |
Tokyo |
| ZIP/Postal code |
113-0033 |
| Country |
Japan |
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| Platforms (3) |
| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (20)
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| GSM1204760 |
H441_siTTF-1_0h |
| GSM1204761 |
H441_siTTF-1_TGF-beta_1p5h |
| GSM1204762 |
H441_siTTF-1_TGF-beta_24h |
| GSM1246712 |
input DNA #1, H441 cells |
| GSM1246713 |
Smad3 ChIP-seq, H441/siControl cells |
| GSM1246714 |
Smad3 ChIP-seq, H441/siTTF-1 cells |
| GSM1246715 |
TTF-1 ChIP-seq, H441 cells, 0h |
| GSM1246716 |
TTF-1 ChIP-seq, H441 cells, 1.5h |
| GSM1246717 |
input DNA #2, H441 cells |
| GSM1246718 |
Smad4 ChIP-seq, H441/siControl cells |
| GSM1246719 |
Smad4 ChIP-seq, H441/siTTF-1 cells |
| GSM1246720 |
input DNA, A549 cells |
| GSM1246721 |
Smad3 ChIP-seq, A549 cells |
| GSM1359821 |
A549 cells infected with Ad-LacZ, control |
| GSM1359822 |
A549 cells infected with Ad-TTF-1, control |
| GSM1359823 |
A549 cells infected with Ad-LacZ, TGF-beta treated |
| GSM1359824 |
A549 cells infected with Ad-TTF-1, TGF-beta treated |
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| This SuperSeries is composed of the following SubSeries: |
| GSE49675 |
Expression data of human lung adenocarcinoma cell line H441 treated with TTF-1/NKX2-1 siRNA and TGF-beta |
| GSE51509 |
Smad3, Smad4 and TTF-1/NKX2-1 binding sites in H441/A549 lung cancer cell lines |
| GSE56356 |
Effect of TTF-1/NKX2-1 expression on TGF-beta induced gene expression in A549 lung cancer cell line. |
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| Relations |
| BioProject |
PRJNA223329 |
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