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Series GSE51022 Query DataSets for GSE51022
Status Public on Jan 15, 2014
Title ChIP-seq of MDA-MB-134 cell line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ChIP seq experiment in MDA-MB-134 cell line in order to map the estrogen receptor alpha (ER) binding sites following the estrogen treatment in an ILC model. We have characterized the genome wide recruit of ER and scaned the binding sites for the presence of cofactor motifs. The binding peaks were also correlated to E2 regulated genes in this ILC model.
Overall design Four samples were subjected to high throughput sequencing: E-ER (estrogen treated followed by ER IP), E-IgG (estrogen treated followed by IgG), V-ER (EtOH treated followed by ER IP) and Input (MCF7 genomic DNA)
Contributor(s) Bahreini A, Sikora MJ
Citation(s) 24425047
Submission date Sep 19, 2013
Last update date May 15, 2019
Contact name Amir Bahreini
Phone 5712444045
Organization name University of Pittsburgh
Department Human Genetics
Street address 204 Craft Ave A430
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM1235008 E-ER ChIP-seq
GSM1235009 E-IgG ChIP-seq
GSM1235010 V-ER ChIP-seq
BioProject PRJNA219645
SRA SRP030039

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Supplementary file Size Download File type/resource
GSE51022_RAW.tar 50.0 Kb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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