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Series GSE50526 Query DataSets for GSE50526
Status Public on Sep 03, 2013
Title Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary A major part of plant immune response is mediated by signaling pathways controlled by three hormnes, jasmonate, ethylene, and salicylate. The involvement of each of these hormone signaling pathways in Arabidopsis thaliana was investigated in response to infection of a necrotrophic fungal pathogen, A. brassicicola. Arabideopsis mutants deficient in these hormone signaling pathways were compared to wild type.
 
Overall design Expression profiles were obtained from leaves of wild-type (Col-0), dde2-2, ein2-1, and sid2-2 plants at 9 and 24 hours after A. brassicicola inoculation. In addition, expression profiles were obtained from wild-type at 9 and 24 hours after mock inoculation. The replicates were made from three independent experiments (i.e., biological replicates).
Please note that 'Col-0 at 24 hpi with A. brassicicola, biological rep 3' was excluded from data processing because the data did not pass a QC based on affyPML of Bioconducter.
 
Contributor(s) Botanga C, Glazebrook J
Citation(s) 24367018, 24439900
Submission date Sep 02, 2013
Last update date Aug 15, 2018
Contact name Jane Glazebrook
E-mail(s) jglazebr@umn.edu
Phone 6126245194
Organization name University of Minnesota
Department Plant Biology
Street address 1500 Gortner Avenue
City Saint Paul
State/province MN
ZIP/Postal code 55108
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (29)
GSM1220702 Col-0 at 9 hpi with mock, biological rep 1
GSM1220703 Col-0 at 9 hpi with A. brassicicola, biological rep 1
GSM1220704 dde2-2 at 9 hpi with A. brassicicola, biological rep 1
Relations
Affiliated with GSE69995
BioProject PRJNA217877

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50526_RAW.tar 91.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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