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Series GSE49843 Query DataSets for GSE49843
Status Public on Oct 04, 2013
Title TRIM28 is essential for erythroblast differentiation in the mouse
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We discovered that Trim28 genetic loss in the adult mouse leads to defective immature erythropoiesis in the bone marrow and consequently to anemia.We further found that TRIM28 controls erythropoiesis in a cell-autonomous manner by inducibly deleting Trim28 exclusively in hematopoietic cells. Finally, in the absence of TRIM28 we observed increased apoptosis as well as diminished expression of multiple erythroid transcription factors and heme biosynthetic enzymes in immature erythroid cells. Thus, TRIM28 is essential for the cell-autonomous development of immature erythroblasts in the bone marrow.
 
Overall design To induce Cre recombinase from the Mx1Cre transgene, poly(I:C) was injected 5 times every other day. Mice were analyzed two weeks after completion of poly(I:C) administration. TRIM28 mutant mice generate two distinct types of immature erythroid cells; KOa, with 5-8% of the Trim28 gene remaining undeleted (still bearing 26% of residual mRNA), and KOb, with 1-4% of the gene remaining undeleted (and with 18% of mRNA remaining).
 
Contributor(s) Hosoya T, Engel JD
Citation(s) 24092935
Submission date Aug 13, 2013
Last update date May 15, 2019
Contact name Tomonori Hosoya
Organization name University of Michigan
Department CDB
Lab Engel
Street address 109 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (9)
GSM1208164 RNA-Seq_control_FFa_0
GSM1208165 RNA-Seq_control_FFa_1
GSM1208166 RNA-Seq_control_FFa_2
Relations
BioProject PRJNA215083
SRA SRP028806

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49843_gene_exp.diff_22345-22353.txt.gz 2.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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