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Series GSE49511 Query DataSets for GSE49511
Status Public on Oct 30, 2014
Title Identifying Targets of DSX with ChIP-seq
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We have used ChIP-seq on Drosophila S2 cells to characterize genome-wide DSX occupancy.
 
Overall design We have perfomed ChIP-seq on S2 cells transfected with either V5-tagged DSXF or DSXM constructs. We performed three biological replicates for each ChIP sample and two biological replicates for the input samples. For peak calling and analysis, the reads from all biological replicates were pooled before aligning them to the genome.
 
Contributor(s) Clough E, Jimenez E, Kim Y, Whitworth C, Neville M, Hempel L, Pavlou H, Chen Z, Sturgill D, Dale R, Smith HE, Przytycka TM, Goodwin S, Van Doren M, Oliver B
Citation(s) 25535918
Submission date Aug 02, 2013
Last update date May 15, 2019
Contact name Brian Oliver
E-mail(s) briano@helix.nih.gov
Phone 301-496-5495
Organization name NIDDK, NIH
Department LCDB
Lab Developmental Genomics
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (3)
GSM1200247 S2_DsxF
GSM1200248 S2_DsxM
GSM1200249 S2_input
This SubSeries is part of SuperSeries:
GSE49480 Identifying targets of DSX with ChIP-seq, DamID-seq and DamID-chip and transcriptional response to DSX isoform switch
Relations
BioProject PRJNA214088
SRA SRP028410

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49511_RAW.tar 35.7 Mb (http)(custom) TAR (of BEDGRAPH)
GSE49511_S2_DsxF.peaks.1.11.bed.gz 54.9 Kb (ftp)(http) BED
GSE49511_S2_DsxM.peaks.1.11.bed.gz 45.4 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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