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Series GSE49404 Query DataSets for GSE49404
Status Public on Aug 01, 2013
Title RMST associates with SOX2 to regulate neurogenesis [ChIP-Seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report that knockdown of the lncRNA RMST changes the chromatin binding profile of the transcription factor SOX2.
 
Overall design Examination of SOX2 chromatin binding profile under normal and RMST-depleted conditions in differentiating neural stem cells.
 
Contributor(s) Ng S, Stanton L
Citation(s) 23932716
Submission date Jul 31, 2013
Last update date May 15, 2019
Contact name Shi Yan Ng
E-mail(s) shiyan_ng@harvard.edu
Organization name Harvard University
Street address 7 Divinity Ave
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (3)
GSM1198992 input
GSM1198993 si-NT SOX2 ChIP
GSM1198994 si-RMST SOX2 ChIP
This SubSeries is part of SuperSeries:
GSE49405 RMST associates with SOX2 to regulate neurogenesis
Relations
BioProject PRJNA213908
SRA SRP028358

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49404_RAW.tar 476.1 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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