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Series GSE49282 Query DataSets for GSE49282
Status Public on Jul 27, 2013
Title Identification of Arabidopsis thaliana PRR7 regulated clock components and circadian outputs through genome-wide binding sites analysis
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We identified genome-wide PRR7 targets by conducting chromatin immunoprecipitation combined with high-throughput sequencing.
 
Overall design Lines include prr7-3 and prr7-3 PRR7::HA-PRR7 #151, and we conducted immunoprecipitations using an anti-HA antibody.
 
Contributor(s) Liu T, Carlsson J, Newton L, Takeuchi T, Farre EM
Citation(s) 23808423
Submission date Jul 26, 2013
Last update date Sep 04, 2019
Contact name Tiffany L Liu
E-mail(s) liutiff1@msu.edu
Organization name Michigan State University
Department Plant Biology
Lab Farre
Street address 3260 Molecular Plant Sciences Building
City East Lansing
State/province Michigan
ZIP/Postal code 48824
Country USA
 
Platforms (1)
GPL9302 Illumina Genome Analyzer II (Arabidopsis thaliana)
Samples (6)
GSM1196645 prr7-3 Input (ExpI)
GSM1196646 prr7-3 IP (ExpI)
GSM1196647 prr7-3 PRR7::HA-PRR7 #151 Input (ExpI)
Relations
BioProject PRJNA213477
SRA SRP028272

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49282_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data not applicable for this record

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