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Series GSE48917 Query DataSets for GSE48917
Status Public on Nov 04, 2013
Title Chromatin Immunoprecipitation of TRA-1 in C. elegans and C. briggsae
Organisms Caenorhabditis briggsae; Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The goal of this study is to identify and characterize sites in the C. elegans genome bound by the transcription factor TRA-1.
Overall design TRA-1 ChIP-seq was performed in the following stages of animals in duplicate: 1) L2 stage of C. elegans wild-type N2 strain; 2) L3 stage of C. elegans wild-type N2 strain; 3) young adult stage of C. elegans glp-4(bn2) mutant; 4) young adult stage of C. elegans spe-11(hc77) mutant; 5) L3 stage of C. briggsae wild-type AF16 strain. As a negative control, TRA-1 ChIP-seq was also performed in C. elegans L3 stage with tra-1(e1834) homozygous and heterozygous mutation. Input DNA was also sequenced in each condition.
Contributor(s) Berkseth M, Ikegami K, Lieb JD, Zarkower D
Citation(s) 24046365
Submission date Jul 16, 2013
Last update date May 15, 2019
Contact name Kohta Ikegami
Phone (773) 834-4260
Organization name University of Chicago
Department Pediatrics
Lab Ikegami Lab
Street address 900 E. 57th Street, KCBD 5240
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
Platforms (3)
GPL9269 Illumina Genome Analyzer II (Caenorhabditis elegans)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL16160 Illumina HiSeq 2000 (Caenorhabditis briggsae)
Samples (19)
GSM1186792 DZ038_TRA1_N2L2
GSM1186793 DZ039_TRA1_N2L2
GSM1186794 DZ044_input_N2L2
BioProject PRJNA212403
SRA SRP027532

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Supplementary file Size Download File type/resource
GSE48917_RAW.tar 1.2 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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