|
| Status |
Public on Jul 13, 2016 |
| Title |
Genome-wide DNA methylation maps during dehydration in leaf tissues of Boea hygrometrica |
| Organism |
Dorcoceras hygrometricum |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
To examine the Boea hygrometrica genome methylation landscape and assess its functional significance during dehydration, we generated the first single-base resolution genome methylation maps for leaf tissues of hydrated, dehydrating to 70% RWC and dehydrating to 10% RWC (desiccating). The overall density of methyl-cytosine was not broadly altered by dehydration. There is, however, a small increase in intensity both for the whole genome and regionally during the first dehydration step (70% RWC) returning to near hydrated levels as leaves desiccate. We identified 5575 differentially methylated region-related genes during dehydration. The finding may provide an important clue for exploring molecular mechanisms and the regulation of desiccation tolerance at the whole-genome level.
|
| |
|
| Overall design |
Examination of DNA methylation by BS-Seq in hydrated, dehydrating to 70% RWC and dehydrating to 10% RWC leaf tissues.
|
| |
|
| Contributor(s) |
Xiao L |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 16, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Lihong Xiao |
| E-mail(s) |
xiaolihong6290@gmail.com
|
| Organization name |
Capital Normal University
|
| Street address |
No.105 North Road of West 3rd-ring Road.Haidian District
|
| City |
Beijing |
| ZIP/Postal code |
100048 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL17424 |
Illumina HiSeq 2000 (Boea hygrometrica) |
|
| Samples (3) |
|
| Relations |
| BioProject |
PRJNA212240 |
| SRA |
SRP027502 |
