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Series GSE48685 Query DataSets for GSE48685
Status Public on Jul 11, 2013
Title Mammary-specific gene activation is defined by progressive recruitment of STAT5 followed by the establishment of H3K4me3 marks
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary RNA-seq (at parturition: L1) as well as STAT5A and H3K4me3 ChIP-seq with wild-type mammary gland tissues (at day 6 of pregnancy: p6, day 13 of pregnancy: p13, and L1).
 
Overall design Examination of genome-wide STAT5A and H3K4me3 and whole transcriptome in wild-type mammary tissues.
 
Contributor(s) Kang K, Yamaji D, Yoo KH, Robinson GW, Hennighausen L
Citation(s) 24277936
Submission date Jul 10, 2013
Last update date May 15, 2019
Contact name Keunsoo Kang
E-mail kangk2@niddk.nih.gov
Phone 301-435-6636
Organization name NIH
Department NIDDK
Lab LGP
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (11)
GSM1183562 H3K4me3_P6
GSM1183563 Input_P6
GSM1183564 STAT5A_P6
Relations
BioProject PRJNA211209
SRA SRP026693

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48685_RAW.tar 360.4 Mb (http)(custom) TAR (of BED, BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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