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Series GSE47966 Query DataSets for GSE47966
Status Public on Jul 03, 2013
Title Global epigenomic reconfiguration during mammalian brain development
Organisms Homo sapiens; Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary Whole-genome single-base resolution methylcytosine and hydroxymethylcytosine maps reveal profound changes that occur during frontal cortex development in humans and mice.
Overall design MethylC-Seq, TAB-Seq, RNA-Seq and hmC-IP (CMS-IP and biotin-glucosyl tagging) from Homo sapiens and Mus musculus frontal cortex tissue and neural sorted cell populations. Additionally, MethylC-Seq was performed on the HUES6 embryonic stem cell line (Homo sapiens).
Contributor(s) Lister R, Ecker JR
Citation(s) 23828890, 26030523
Submission date Jun 14, 2013
Last update date Sep 09, 2019
Contact name Joseph R Ecker
Phone 8584534100
Organization name HHMI-Salk-Institute
Department Genomic Analysis Laboratory
Lab Ecker lab
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (65)
GSM1163695 MethylC-Seq_hs_fc_fetal
GSM1164630 MethylC-Seq_hs_mfg_12yr
GSM1164631 MethylC-Seq_hs_mfg_16yr
BioProject PRJNA208503
SRA SRP026048

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47966_RAW.tar 198.9 Gb (http)(custom) TAR (of BAM, TXT)
GSE47966_README.txt 3.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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