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Series GSE47316 Query DataSets for GSE47316
Status Public on May 28, 2013
Title H3K27ac (Active Motif).OR Head Nuclei.Solexa
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary modENCODE_submission_5578
This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS sequencing platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Mixed Adult; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); tissue (organism part) ; Antibody H3K27ac (Active Motif) (target is H3K27ac); Developmental Stage Mixed Adult
Web link http://www.modencode.org
 
Contributor(s) Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63467
Submission date May 23, 2013
Last update date May 15, 2019
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (4)
GSM1147471 H3K27ac Active Motif OR Head Nuclei D.melanogaster Input Rep1
GSM1147472 H3K27ac Active Motif OR Head Nuclei D.melanogaster Input Rep2
GSM1147473 H3K27ac Active Motif OR Head Nuclei D.melanogaster ChIP Rep1
Relations
SRA SRP023441

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47316_RAW.tar 260.0 Kb (http)(custom) TAR (of GFF3)
GSE47316_repset.18972724.enrichment.clusters.gff3.gz 148.6 Kb (ftp)(http) GFF3
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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