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Series GSE47120 Query DataSets for GSE47120
Status Public on Jun 13, 2013
Title Effect of ETV1 knockdown on genome wide AR binding in LNCaP Cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Translocation of ETS transcription factors including ERG and ETV1 occur in half of all prostate cancers. LNCaP cells harbor an ETV1 translocation. We performed ChIP-Seq analysis to determine the role of ETV1 on AR binding. The localization of enhancers were determined by H3K4me1 ChIP-Seq.
 
Overall design To determine ETV1 and H3K4me1 localization, logarithmically growing cells
 
Contributor(s) Chen Y, Sawyers CL
Citation(s) 23817021
Submission date May 20, 2013
Last update date May 15, 2019
Contact name Yu Chen
E-mail(s) cheny1@mskcc.org
Phone 646-888-2163
Organization name Memorial Sloan Kettering Cancer Center
Department Human Oncology and Pathogenesis Program
Lab Chen
Street address 1275 York Ave, Box 20
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (5)
GSM1145322 LNCaP-ETV1ChIP
GSM1145323 LNCaP-H3K4me1 ChIP
GSM1145324 LNCaP-shScr-AR ChIP
This SubSeries is part of SuperSeries:
GSE47220 ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss
Relations
BioProject PRJNA203679
SRA SRP022924

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47120_RAW.tar 3.3 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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