NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE46096 Query DataSets for GSE46096
Status Public on Apr 17, 2013
Title Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.”
 
Overall design Seventeen compartments of the Early Maturation stage of the soybean seeds were analyzed. Three to four biological replicates were collected for each compartment.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
Citation(s) 25963149
Submission date Apr 16, 2013
Last update date May 15, 2019
Contact name John Harada
E-mail(s) jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (51)
GSM1123204 Soybean Early Maturation Axis Parenchyma-Biological replicate 1
GSM1123205 Soybean Early Maturation Axis Parenchyma-Biological replicate 2
GSM1123206 Soybean Early Maturation Axis Parenchyma-Biological replicate 4
This SubSeries is part of SuperSeries:
GSE116036 mRNA profiling of soybean seed regions and tissues at five developmental stages
Relations
BioProject PRJNA197251
SRA SRP021098

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46096_RAW.tar 13.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap