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Series GSE45938 Query DataSets for GSE45938
Status Public on Jul 01, 2013
Title Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS (ChIP)
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Characterization of the activities of the transcription factor that AG encodes throughout flower development using perturbation assays and ChIP-Seq in combination with a floral induction system (FIS) that allows a stage-specific analysis of flower development.
 
Overall design Examination of genomic regions bound by fully functional AG-GFP protein at approx floral stage 4-5 as compared to a negative control sample.
 
Contributor(s) Ó’Maoiléidigh D, Wuest S, Ryan P, Raganelli A, Wellmer F
Citation(s) 23821642
Submission date Apr 10, 2013
Last update date May 15, 2019
Contact name Pat Ryan
E-mail(s) pat.ryan12@gmail.com
Organization name TCD
Street address College Green
City Dublin
ZIP/Postal code na
Country Ireland
 
Platforms (1)
GPL11221 Illumina Genome Analyzer IIx (Arabidopsis thaliana)
Samples (4)
GSM1120014 AG-GFP (AP1-GR ap1 cal) ChIPseq replicate 1
GSM1120015 AG-GFP (AP1-GR ap1 cal) ChIPseq replicate 2
GSM1120016 negative control (AP1-GR ap1 cal) replicate 1
This SubSeries is part of SuperSeries:
GSE45939 Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
Relations
BioProject PRJNA196761
SRA SRP020911

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45938_ag_peaks.csv.gz 22.9 Kb (ftp)(http) CSV
GSE45938_ag_targets.csv.gz 155.4 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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