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Series GSE45667 Query DataSets for GSE45667
Status Public on Apr 02, 2013
Title How cyanobacteria pose new problems to old methods: Challenges in microarray time series analysis
Organism Synechocystis sp. PCC 6803
Experiment type Expression profiling by array
Summary Quantification of circadian gene expression in WT Synechocystis sp. PCC 6803 cells
Overall design We quantified circadian gene expression of the wild type Synechocystis PCC6083 strain. Over a 24 h time course, 6 samples for RNA isolation were taken at the following time points: 30 minutes before and after light is switched off (sample 1 - CT 11.5 and sample 2 - CT 12.5), 30 minutes before midnight (sample 3 - CT 17.5), 348 30 minutes before and after light onset (sample 4 - CT 23.5 and sample 5 - CT 0.5) and 30 minutes before noon (sample 6 - CT 5.5).
Contributor(s) Lehmann R, Machne R, Georg J, Benary M, Hertel S, Rediger A, Beck C, Wiegard A, Axmann IM, Steuer R
Citation(s) 23601192, 25056315
Submission date Apr 01, 2013
Last update date Jan 23, 2017
Contact name Robert Lehmann
Organization name Humboldt University Berlin
Department Institute for Theoretical Biology
Street address Invalidenstrasse 43
City Berlin
ZIP/Postal code 10115
Country Germany
Platforms (1)
GPL15867 Agilent-027432 Syn6803_expressions454_4-3probes
Samples (12)
GSM1111628 PCC6803_WT_CT11.5_rep1
GSM1111629 PCC6803_WT_CT12.5_rep1
GSM1111630 PCC6803_WT_CT17.5_rep1
BioProject PRJNA195575

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45667_Expr_Matrix_p-value.txt.gz 2.8 Mb (ftp)(http) TXT
GSE45667_RAW.tar 71.8 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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