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Series GSE4562 Query DataSets for GSE4562
Status Public on May 01, 2007
Title E. coli K-12 mutants yceP, trpE, and tnaA biofilm cell 24 hr for indole paper
Platform organism Escherichia coli K-12
Sample organism Escherichia coli
Experiment type Expression profiling by array
Summary Gene expression of (i) K-12 yceP biofilms upon addition of 600 ┬ÁM indole in LB glu medium, (ii) K-12 biofilms due to the trpE mutation in LB glu medium, and (iii) K-12 biofilms due to the tnaA mutation in LB medium.
Keywords: indole effect and cell type comparison
 
Overall design Strains:E. coli K12 BW25113 delta yceP, trpE, tnaA and wild type
Medium:LB glu or LB
Biofilm cells grown on glass wool
Harvest time:24hr
 
Contributor(s) Wood TK, Lee J
Citation(s) 17511876
Submission date Mar 27, 2006
Last update date Mar 16, 2012
Contact name Jintae Lee
E-mail(s) Jintae.Lee@chemail.tamu.edu
Phone 1-979-845-1744
Fax 1-979-845-6446
Organization name Texas A&M University
Department Chemical Engineering
Street address MS 3122
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platforms (1)
GPL199 [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array
Samples (7)
GSM101941 E. coli K1 BW25113 delta yceP LB glu 24 hr biofilm cells with 0.06% DMF
GSM101942 E. coli K1 BW25113 delta yceP LB glu 24 hr biofilm cells with 600 microM indole
GSM101943 E. coli K1 BW25113 wild type LB glu 24 hr biofilm cells
Relations
BioProject PRJNA94487

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE4562_RAW.tar 13.7 Mb (http)(custom) TAR (of CEL, EXP)
SRA Run SelectorHelp
Raw data provided as supplementary file

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