|
| Status |
Public on Jan 02, 2014 |
| Title |
Genome-wide binding of TEAD4 in gastric cancer cell lines MKN28 and SNU216 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To access target binding sites of TEAD4 in gastric cancer, TEAD4 binding was investigated using MKN28 and SNU216 cell lines by ChIP-seq.
|
| |
|
| Overall design |
MKN28 and SNU216 cell lines were cross-linked with formaldehyde, fractionated by sonication and immunoprecipitated by TEAD4 antibody. Immunoprecipitated DNA was prepared by generating libraries and sequenced by massive parallel sequencing.
|
| |
|
| Contributor(s) |
Lim B, Kim Y, Kim S |
| Citation(s) |
24325916 |
| |
| Submission date |
Feb 20, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Byungho Lim |
| E-mail(s) |
lbh82@kribb.re.kr
|
| Organization name |
Korea Research Institute of Bioscience and Biotechnology (KRIBB)
|
| Street address |
Medical Genomics Research Center, KRIBB, 125 Daehak-ro, Yuseong-gu
|
| City |
Daejeon |
| ZIP/Postal code |
305-806 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA189846 |
| SRA |
SRP018767 |
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