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| Status |
Public on Feb 06, 2014 |
| Title |
Comparison of cardiomyocyte transcripts after knockdown of Gata4 in zebrafish embryos |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The Gata4 transcription factor is essential for normal heart development, but the molecular basis for its function remain poorly understood. We profiled at the whole genome level transcript changes in cardiomyocytes when Gata4 is depleted from zebrafish embryos. Our objective was to elucidate the cardiomyocyte-specific molecular program functioning downstream of Gata4 in order to better understand the role of Gata4 in cardiac morphogenesis.
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| Overall design |
Six samples in total are deposited. Three replicate control samples and three replicate Gata4 morphant samples were analyzed.
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| |
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| Contributor(s) |
Rosenfeld G, Evans T |
| Citation(s) |
23850773 |
| |
| Submission date |
Feb 11, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Gabriel Rosenfeld |
| E-mail(s) |
gar2007@med.cornell.edu
|
| Organization name |
Weill Cornell
|
| Department |
Cell and Developmental Biology
|
| Lab |
Todd Evans Lab
|
| Street address |
1300 York Ave. Rm. LC711
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL9319 |
Illumina Genome Analyzer II (Danio rerio) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA189226 |
| SRA |
SRP018538 |
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