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Series GSE43936 Query DataSets for GSE43936
Status Public on Feb 01, 2013
Title Evaluation of effect of PTEN gene deletion in mouse CD4+ Th1 clones after stimulation
Organism Mus musculus
Experiment type Expression profiling by array
Summary PTEN is thought to play a critical role in T cell activation by negatively regulating the PI3K signaling pathway important for cellular activation, growth, and proliferation. T cells from mice in which PTEN was conditionally deleted in the thymus were reported to display CD28-independent IL-2 production and relative resistance to anergy induction. However, such observations could have stemmed from alterations in T cell development due to early deletion in thymocytes. To directly eliminate PTEN in post-thymic T cells, we utilized CAR Tg x PTENflox/flox mice which enabled gene deletion using a Cre adenovirus in vitro. Gene expression profiling revealed a small subset of induced genes that were augmented upon PTEN deletion and T cell stimulation. Our results indicate that deletion of PTEN can augment the activation of post-thymic T cells. Nonetheless, PTEN inhibition may be a viable target for immune potentiation due to increased cytokine production by activated CD4+ cells.
 
Overall design It was of interest to determine the spectrum of transcripts regulated by PTEN using gene expression profiling. To this end, CAR Tg x PTENflox/flox Th1 clones were either treated with adeno-Cre or adeno-EV, then confirmed to have PTEN protein abscence by western blot, then stimulated for 6 hours with anti-CD3/anti-CD28 mAb- coated beads and analyzed (2 total conditions). The experiment was replicated so there are 2 samples for each condition.
 
Contributor(s) Locke FL, Gajewski TF, Zha Y
Citation(s) 23851688
Submission date Jan 31, 2013
Last update date Feb 11, 2019
Contact name yuanyuan zha
E-mail(s) yzha@uchicago.edu
Phone 772-702-4812
Fax 773-702-7195
Organization name University of Chicago
Department Department of Pathology
Street address 910 E. 58th St. MKL051
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (4)
GSM1074697 T cells_empty virus transduced_stimulated_6 hours_rep1
GSM1074698 T cells_Cre virus transduced_stimulated_6 hours_rep1
GSM1074699 T cells_empty virus transduced_stimulated_6 hours_rep2
Relations
BioProject PRJNA188179

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43936_RAW.tar 15.2 Mb (http)(custom) TAR (of CEL)
GSE43936_fold_change_data.txt.gz 2.7 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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