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Series GSE43857 Query DataSets for GSE43857
Status Public on Mar 05, 2013
Title Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq)
Organism Arabidopsis thaliana
Experiment type Methylation profiling by high throughput sequencing
Summary Natural epigenetic variation provides a source for the generation of phenotypic diversity, but to understand its contribution to phenotypic diversity, its interaction with genetic variation requires further investigation.
Overall design MethylC-seq from naturally-occurring Arabidopsis accessions
Web link
Contributor(s) Schmitz RJ, Kawakatsu T, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Schultz MD, Chen H, Ecker JR
Citation(s) 23467092, 27419873
Submission date Jan 29, 2013
Last update date May 29, 2019
Contact name Joseph R Ecker
Phone 8584534100
Organization name HHMI-Salk-Institute
Department Genomic Analysis Laboratory
Lab Ecker lab
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (2)
GPL11221 Illumina Genome Analyzer IIx (Arabidopsis thaliana)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (927)
GSM1085191 Aa_0
GSM1085192 Abd_0
GSM1085193 Ag_0
BioProject PRJNA187927
SRA SRP018263

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43857_RAW.tar 130.8 Gb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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