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Series GSE43753 Query DataSets for GSE43753
Status Public on Apr 19, 2013
Title Doxorubicin enhances nucleosome turnover around promoters
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Expression profiling by genome tiling array
Summary We use a metabolic labeling strategy for directly measuring nucleosome turnover to examine the effect of doxorubicin on chromatin dynamics in squamous cell carcinoma cell lines derived from genetically defined mice. We find that doxorubicin enhances nucleosome turnover around gene promoters, and turnover correlates with gene expression level.

Keywords: Chromatin affinity-purification on microarray
 
Overall design 26 CATCH-IT arrays and 8 expression arrays.
 
Contributor(s) Yang F, Kemp CJ, Henikoff S
Citation(s) 23602475
Submission date Jan 25, 2013
Last update date May 11, 2013
Contact name Jorja Henikoff
E-mail(s) jorja@fhcrc.org
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platforms (3)
GPL9833 NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design
GPL9899 NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design
GPL16533 NimbleGen Mouse 2.1M tiling (MM9_Deluxe_Prom_ChIP_HX1)
Samples (34)
GSM1070343 Atm_SCC_CATCH-IT_Doxo_0h_(530613A01_2)
GSM1070344 Atm_SCC_CATCH-IT_Doxo_1h_(538323A01_2)
GSM1070345 Atm_SCC_CATCH-IT_Doxo_24h_(538428A01_2)
Relations
BioProject PRJNA187334

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43753_RAW.tar 3.6 Gb (http)(custom) TAR (of CALLS, GFF, PAIR, WIG)
Processed data included within Sample table
Processed data provided as supplementary file

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