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Series GSE43616 Query DataSets for GSE43616
Status Public on Mar 16, 2016
Title Time-course transcriptome of wild-type Arabidopsis leaf
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary During the senescence stage, leaves undergo degeneration and relocate nutrients accumulated during the growth stage to sink parts such as seeds, critically contributing to plants’ productivity and fitness. Here, we asked how leaf transcriptome is regulated during the senescence stage by performing directional sequencing of total and small RNAs for the entire lifespan of Arabidopsis leaves.
Overall design The total RNA and small RNA profiles of the Arabidopsis leaf along lifespan (14 and 7 time points, respectively) were generated by next-generation sequencing using Illumina Hiseq2000. Two independent biological replicates were used for each experiment.
Contributor(s) Woo H, Koo H, Kim J, Jeong H, Lim P, Hwang D, Nam H
Citation(s) 26966169
Submission date Jan 18, 2013
Last update date May 15, 2019
Contact name Hee Jung Koo
Phone 82-10-90976741
Organization name Pohang University of Science and Technology
Street address Hyojadong San 31
City Pohang
ZIP/Postal code 790-784
Country South Korea
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (42)
GSM1723715 totalRNA4-1
GSM1723716 totalRNA6-1
GSM1723717 totalRNA8-1
BioProject PRJNA186843
SRA SRP018034

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43616_smRNA_count_set1.txt.gz 1.1 Mb (ftp)(http) TXT
GSE43616_smRNA_count_set2.txt.gz 1.7 Mb (ftp)(http) TXT
GSE43616_total_RNA_FPKM_set1.txt.gz 1.7 Mb (ftp)(http) TXT
GSE43616_total_RNA_FPKM_set2.txt.gz 1.7 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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