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Series GSE42856 Query DataSets for GSE42856
Status Public on Dec 01, 2013
Title Transcriptome analysis of Traf6 function in early zebrafish embryogenesis
Organism Danio rerio
Experiment type Expression profiling by array
Summary In order to study Traf6 function during early zebrafish embryogenesis, transcriptome expression profiling was performed at 30% epiboly using a morpholino based knock-down approach.
 
Overall design Two-factorial design with the factors 'Treatment' (5 levels:'Phenol Red', 'Standard Control', 'Mismatch', 'Morpholino1' and Morpholino 2') and 'Dose' (3 levels: 'Low', 'Middel' and 'High') with the factor 'Dose' only being applicable to the morpholino injections and not to the 'Phenol Red' control.
 
Contributor(s) Stockhammer OW, Rauwerda H, Jonker MJ, Wittink FR, Breit TM, Meijer AH, Spaink HP
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Submission date Dec 11, 2012
Last update date Dec 01, 2013
Contact name Oliver Stockhammer
E-mail(s) o.w.stockhammer@amc.uva.nl
Organization name AMC
Department Medical Microbiology
Street address Meibergdreef 15
City Amsterdam
State/province NH
ZIP/Postal code 1105 AZ
Country Netherlands
 
Platforms (1)
GPL7735 LU/IBL_D.rerio_44k_015747
Samples (122)
GSM1051337 Embryo_Phenol.Re.injected_rep1
GSM1051338 Embryo_Phenol.Re.injected_rep1 Reference
GSM1051339 Embryo_Phenol.Re.injected_rep2
Relations
BioProject PRJNA183692

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42856_RAW.tar 1.5 Gb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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