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Series GSE42741 Query DataSets for GSE42741
Status Public on Sep 05, 2013
Title Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by genome tiling array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 24011592
Submission date Dec 05, 2012
Last update date May 15, 2019
Contact name Kohta Ikegami
E-mail(s) ikgmk@uchicago.edu
Phone (773) 834-4260
Organization name University of Chicago
Department Pediatrics
Lab Ikegami Lab
Street address 900 E. 57th Street, KCBD 5240
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (3)
GPL8647 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1
GPL9269 Illumina Genome Analyzer II (Caenorhabditis elegans)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
Samples (23)
GSM1047319 IMB-1 ChIP-chip in N2 mixed-stage embryos (387661)
GSM1047320 IMB-1 ChIP-chip in N2 mixed-stage embryos (388119)
GSM1048401 AMA-1 ChIP-seq in N2 mixed-stage embryos (BC085)
This SuperSeries is composed of the following SubSeries:
GSE42651 Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [array]
GSE42714 Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq]
Relations
Affiliated with GSE24318
Affiliated with GSE28772
Affiliated with GSE28773
Affiliated with GSE28774
Affiliated with GSE22751
Affiliated with GSE25933
Affiliated with GSE24241
BioProject PRJNA182985

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42741_RAW.tar 724.6 Mb (http)(custom) TAR (of BEDGRAPH, PAIR, WIG)
SRA Run SelectorHelp

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