|
| Status |
Public on Oct 02, 2014 |
| Title |
Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We sequenced mRNA from WT and PhytochromeInteractingFactor (pif) mutant seedlings grown for 2d in darkness.
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| |
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| Overall design |
Transcriptome profiles of the wild-type (WT), pif1, pif3, pif, pif5 monogenic mutants, pif3pif4pif5 (pif345), pif1pif4pif5(pif145), pif1pif3pif5 (pif135) and pif1pif3pif4 (pif134) triple mutants and pif1pif3pif4pif5 (pifq) quadruple mutant seedlings. Biological triplicate samples were analyzed from libraries constructed using a 3'-capture, 5' to 3' directional method.
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| |
|
| Contributor(s) |
Tepperman JM, Quail PH |
| Citation(s) |
25122696 |
| Submission date |
Dec 01, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
james m tepperman |
| E-mail(s) |
jmtepp@berkeley.edu
|
| Phone |
510-559-5935
|
| Organization name |
Plant Gene Expression Center/UC Berkeley
|
| Department |
Plant and Microbial Biology
|
| Lab |
QUAIL
|
| Street address |
800 Buchanan St.
|
| City |
Albany |
| State/province |
CA |
| ZIP/Postal code |
94710 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE43286 |
Genome-wide identification of PIF-binding sites and direct-target genes of PIF transcriptional regulation in skotomorphogenesis |
|
| Relations |
| SRA |
SRP017386 |
| BioProject |
PRJNA182723 |
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