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Series GSE42338 Query DataSets for GSE42338
Status Public on Feb 21, 2013
Title Exposure time during postembryonic development influences persistent biological effects of the insecticide carbaryl in green frogs (Lithobates clamitans)
Platform organisms Xenopus laevis; Aquarana catesbeiana; Lithobates pipiens
Sample organism Lithobates clamitans
Experiment type Expression profiling by array
Summary The impact of pesticides on amphibian metamorphosis may vary depending on developmental stage of individuals during the exposure period. Some anurans experience increased rates of development when exposure to the insecticide carbaryl occurs later in larval development. We exposed developing northern green frog tadpoles (Lithobates clamitans) to a 3 day pulsatile exposure of 1 mg/L carbaryl at 16 weeks relative to the starting free-swimming Gosner stage 25 (Gosner, 1960) and examined treatment effects on brain mRNA abundance profiles of Gosner stage 46 metamorphs using an amphibian cDNA microarray.
 
Overall design Five individuals from control non exposed tadpoles and six animals that had been exposed transiently for 3 days to carbaryl at week 16 and allowed to continue development until Gosner stage 46 were randomly selected for analysis of brain mRNA levels evaluated using the MAGEX DNA microarray.
 
Contributor(s) Veldhoen NJ, Helbing CC, Boone M
Citation(s) 23399446
Submission date Nov 16, 2012
Last update date Feb 21, 2013
Contact name Nik Veldhoen
E-mail(s) veldhoen@uvic.ca
Phone 250-721-7086
Organization name University of Victoria
Department Biochemistry & Microbiology
Lab Helbing
Street address PO Box 3055 STN CSC
City Victoria
State/province BC
ZIP/Postal code V8W 3P6
Country Canada
 
Platforms (1)
GPL16276 University of Victoria/Caren Helbing Laboratory Frog MAGEX DNA array version 2008
Samples (11)
GSM1038094 [brain]-[control]-[RNA# 1]
GSM1038095 [brain]-[control]-[RNA# 2]
GSM1038096 [brain]-[control]-[RNA# 3]
Relations
BioProject PRJNA181106

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Supplementary file Size Download File type/resource
GSE42338_RAW.tar 2.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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