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Series GSE42290 Query DataSets for GSE42290
Status Public on Feb 15, 2013
Title Expression data in an Arabidopsis cytokinin (CK)-signaling mutant, ahp2,3,5 and its wild type plant (Col-0) under drought and well-water (control) conditions.
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary To understand the role of CK-signaling components, AHPs (His-containing phosphotransfer proteins) in drought stress response, we have employed transcriptional profiling of ahp2,3,5 and it's wild type plant, Col-0 under drought and well-water (control) conditions. Aligent’s Whole Arabidopsis Gene Expression Microarray (G2519F-021169, V4, 4x44K) was used.
 
Overall design Two-week-old WT and ahp2,3,5 mutant plants were transferred from GM plates to soil and grown for an additional week. Three week-old plants were exposed to drought stress for 10 days or grown under well-watered condition in parallel. All rosette leaves of independent 31d-old plants were corrected. Total RNA was prepared and used for the microarray hybridization. Three replicative hybridization experiments were carried out for each independent biological sample.
 
Contributor(s) Nishiyama R, Tanaka M, Seki M, Tran LS
Citation(s) 23487796
Submission date Nov 14, 2012
Last update date Apr 22, 2015
Contact name Rie Nishiyama
Organization name RIKEN
Department Plant Science Center
Lab Signaling Pathway Research Unit
Street address Suehiro-cho 1-7-22, Tsurumi
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
 
Platforms (1)
GPL12621 Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Probe Name version)
Samples (12)
GSM1037236 WT, droughted, replicate 1
GSM1037237 WT, droughted, replicate 2
GSM1037238 WT, droughted, replicate 3
Relations
BioProject PRJNA179554

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42290_RAW.tar 91.2 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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