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Series GSE42029 Query DataSets for GSE42029
Status Public on Sep 05, 2013
Title Silencing of OsMADS29 in Oryza sativa var. PB1
Organism Oryza sativa
Experiment type Expression profiling by array
Summary RNAi mediated suppression of MADS29 severely affects seed set; the surviving seeds are smaller in size with reduced grain filling, abnormal starch grains and aberrant embryo development. To identify the affected pathways due to suppression of this transcription factor in the transgenic seeds, transcriptome analysis using microarray was carried out.
 
Overall design Three biological replicates of MADS29 RNAi (silencing) lines and Wild Type PB1 (control) plants were used for microarray study
 
Contributor(s) Nayar S, Sharma R, Tyagi AK, Kapoor S
Citation(s) 23929654
Submission date Nov 05, 2012
Last update date Dec 27, 2017
Contact name Sanjay Kapoor
E-mail(s) saraswati.nayar@gmail.com
Organization name University of Delhi, South Campus
Department Department of Plant Molecular Biology
Street address Benito Huarez MArg
City New Delhi
ZIP/Postal code 110021
Country India
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (6)
GSM1030890 WTPB1 S3-control-replicate 1
GSM1030891 WTPB1 S3-control-replicate 2
GSM1030892 WTPB1 S3-control-replicate 3
Relations
BioProject PRJNA178943

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42029_RAW.tar 20.2 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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