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Series GSE41935 Query DataSets for GSE41935
Status Public on Jan 31, 2013
Title Transcriptome responses to combined biotic and abiotic stresses in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Biotic and abiotic stresses limit agricultural yields, and plants are often simultaneously exposed to multiple stresses. Combinations of stresses such as heat and drought or cold and high light intensity, have profound effects on crop performance and yeilds
To analyze such responses, we initially compared transcriptome changes in ten Arabidopsis thaliana ecotypes using cold, heat, high light, salt and flagellin treatments as single stress factors or their double combinations.
 
Overall design Arabidopsis thaliana plants of ecotypes (Col, Ler, C24, Cvi, Kas1, An1, Sha, Kyo2, Eri and Kond) were subjected to the following stress treatments: Salt, Cold, Heat, High Light (HL), Salt+Heat, Salt+HL, Cold+HL, Heat+HL, as well as FLG (Flagellin, flg22 peptide), Cold+FLG, Heat+FLG
 
Contributor(s) Rasmussen S, Barah P, Suarez-Rodriguez MC, Friis P, Bones AM, Nielsen HB, Mundy J
Citation(s) 23447525, 26681689, 24148294, 24409190
Submission date Oct 31, 2012
Last update date Feb 05, 2020
Contact name Simon Rasmussen
E-mail(s) simon@cbs.dtu.dk
Phone +45 4525 6148
Organization name Technical University of Denmark
Department Department of Systems Biology
Lab Center for Biological Sequence Analysis
Street address Kemitorvet, Building 208
City Kongens Lyngby
ZIP/Postal code DK-2800
Country Denmark
 
Platforms (1)
GPL16226 NimbleGen Arabidopsis thaliana 4x72K Array [080306_AT6_expr]
Samples (207)
GSM1027678 Leaf-Ler-Ctrl-rep1
GSM1027679 Leaf-Col-Ctrl+Silwet-rep1
GSM1027680 Leaf-C24-Salt-rep1
Relations
BioProject PRJNA178543

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41935_RAW.tar 150.4 Mb (http)(custom) TAR (of XYS)
Raw data provided as supplementary file
Processed data included within Sample table

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