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Series GSE41741 Query DataSets for GSE41741
Status Public on Dec 03, 2012
Title ChIP-seq analysis of CTCF binding sites in lymphocyte subsets [pro-B cells]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes
Overall design For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumina Hi-Seq.
Contributor(s) Torkamani A, Feeney AJ, Verma-Gaur J
Citation(s) 23169622
Submission date Oct 22, 2012
Last update date May 15, 2019
Contact name Ali Torkamani
Organization name TSRI
Street address 3344 North Torrey Pines Court Suite 300
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM1023420 CTCF_pro-B
GSM1023421 pro-B input control
This SubSeries is part of SuperSeries:
GSE41743 ChIP-seq analysis of CTCF binding sites in lymphocyte subsets
BioProject PRJNA178100
SRA SRP016584

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41741_RAW.tar 24.5 Mb (http)(custom) TAR (of TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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