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Series GSE41739 Query DataSets for GSE41739
Status Public on Dec 03, 2012
Title ChIP-seq analysis of CTCF binding sites in lymphocyte subsets [DN thymocytes]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes.
Overall design For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumina Genome Analyzer IIx.
Contributor(s) Torkamani A, Feeney AJ, Verma-Gaur J
Citation(s) 23169622
Submission date Oct 22, 2012
Last update date May 15, 2019
Contact name Ali Torkamani
Organization name TSRI
Street address 3344 North Torrey Pines Court Suite 300
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (2)
GSM1023416 CTCF_DN ChIP_seq
GSM1023417 DN input control
This SubSeries is part of SuperSeries:
GSE41743 ChIP-seq analysis of CTCF binding sites in lymphocyte subsets
BioProject PRJNA178098
SRA SRP016582

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41739_RAW.tar 52.0 Mb (http)(custom) TAR (of TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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