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Series GSE41611 Query DataSets for GSE41611
Status Public on May 28, 2013
Title GRO-seq of Drosophila embryos at 2-2.5 hours and 3-3.5 hours after egg laying (AEL)
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary The transition in developmental control from maternal to zygotic gene products marks a critical step in early embryogenesis. Here, we use GRO-seq analysis to map the genome-wide RNA polymerase distribution during the Drosophila maternal to zygotic transition. This analysis unambiguously identifies the zygotic transcriptome, and provides insight into its mechanisms of regulation.
 
Overall design Two replicates of GRO-seq at each time point.
 
Contributor(s) Saunders A, Ashe HL, Core LJ, Lis JT
Citation(s) 23699410
Submission date Oct 16, 2012
Last update date May 15, 2019
Contact name Abbie Saunders
Organization name University of Manchester
Department Faculty of Life Sciences
Lab Hilary L. Ashe
Street address D.1401 Michael Smith Building, Oxford Road
City Manchester
ZIP/Postal code M13 9PT
Country United Kingdom
 
Platforms (1)
GPL9061 Illumina Genome Analyzer II (Drosophila melanogaster)
Samples (4)
GSM1020091 wt 2hrs Rep1
GSM1020092 wt 2hrs Rep2
GSM1020093 wt 3hrs Rep1
Relations
BioProject PRJNA177686
SRA SRP016138

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41611_GROseq_wt_emb_2-2.5_both.bedgraph.gz 17.7 Mb (ftp)(http) BEDGRAPH
GSE41611_GROseq_wt_emb_3-3.5_both.bedgraph.gz 9.3 Mb (ftp)(http) BEDGRAPH
GSE41611_RAW.tar 30.5 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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