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Series GSE41411 Query DataSets for GSE41411
Status Public on Oct 10, 2012
Title The small RNA PsrR1 affects oligomerization of photosystem I by post-transcriptional repression of psaL in Synechocystis sp. PCC6803
Organism Synechocystis sp. PCC 6803
Experiment type Expression profiling by array
Summary Comparison of gene expression of WT Synechocystis cells with cells overexpressing the sRNA PsrR1 in order to detect direct targets of the sRNA PsrR1.
Overall design We monitored gene expression of an Synechocystis PCC6083 overexpressor strain (psrR1+) (Mitschke et al., 2011) harboring a self-replicating plasmid from which PsrR1 is transcribed under control of the copper responsive PpetJ promoter and a control strain (WT) harboring an empty plasmid 0h and 24 h after copper depletion. For the timepoint (0h) we sampled biological replicates and for timepoint (24h) we sampled biological triplicates.
Contributor(s) Dienst D, Schürgers N, Georg J, Kuchmina E, Wallner T, Lokstein H, Hess WR, Wilde A
Citation(s) 25248550
Submission date Oct 09, 2012
Last update date Jan 23, 2017
Contact name Jens Georg
Organization name University of Freiburg
Street address Schänzlestr. 1
City Freiburg
ZIP/Postal code 79104
Country Germany
Platforms (1)
GPL15867 Agilent-027432 Syn6803_expressions454_4-3probes
Samples (10)
GSM1016707 PCC6803_PsrR1+_0h_copper depletion_1
GSM1016708 PCC6803_PsrR1+_0h_copper depletion_2
GSM1016709 PCC6803_PsrR1+_24h_copper depletion_1
BioProject PRJNA176890

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41411_RAW.tar 61.6 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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