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Series GSE41212 Query DataSets for GSE41212
Status Public on Jul 16, 2013
Title Arabidopsis thaliana seed germination timecourse
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary This series analyses germinating Arabidopsis seeds with both temporal and spatial detail, revealing two transcriptional phases that are separated with respect to testa rupture. Performed as part of the ERA-NET Plant Genomics grant vSEED.
 
Overall design Arabidopsis seeds were dissected into four tissues at nine time-points during seed germination. The tissues were the combined micropylar and chalazal endosperm (MCE), the remaining endosperm (PE), the radicle and embryonic axis (RAD) and the cotyledons (COT). At testa and endosperm rupture the seeds were sampled in separate pre- and post-ruptured populations.
Web link http://vseed.nottingham.ac.uk
 
Contributor(s) Dekkers BJ, Pearce SP, van Bolderen-Veldkamp M, Marshall A, Bassel GW, King JR, Wood AT, Müller K, Widera P, Gilbert J, Krasnogor N, Leubner-Metzger G, Holdsworth MJ, Bentsink L
Citation(s) 23858430
Submission date Sep 28, 2012
Last update date Oct 15, 2013
Contact name Simon Peter Pearce
E-mail(s) simon.pearce@nottingham.ac.uk
Organization name University of Nottingham
Department Plant and Crop Sciences
Street address Sutton Bonington Campus
City Sutton Bonington
State/province Leicestershire
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL16112 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1121501_At_TAIRG, Version 14.0.0]
Samples (116)
GSM1010602 Seed_Dry_rep1
GSM1010603 Seed_MCE_1h_rep1
GSM1010604 Seed_MCE_3h_rep1
Relations
BioProject PRJNA176229

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41212_RAW.tar 217.7 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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