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Series GSE41187 Query DataSets for GSE41187
Status Public on Jun 20, 2013
Title Genome-wide analysis of FNR and σ70 in E. coli under aerobic and anaerobic growth conditions.
Organism Escherichia coli str. K-12 substr. MG1655star
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We found many binding sites for FNR under glucose fermentative anaerobic growth conditions. Also, many binding sites were identified for σ70 under both aerobic and anaerobic growthin conditions. Descirbed in the manuscript "Genome-scale Analysis of E. coli FNR Reveals the Complexity of Bacterial Regulon Structure"
 
Overall design Examination of occupancy of FNR adn σ70 under aerobic and anaerobic growth in conditions.
 
Contributor(s) Myers K, Yan H, Ong I, Chung D, Liang K, Tran F, Keles S, Landick R, Kiley P
Citation(s) 23818864, 23665773
Submission date Sep 27, 2012
Last update date Sep 12, 2014
Contact name Kevin Myers
E-mail kmyers2@wisc.edu
Phone 608-265-0865
Organization name University of Wisconsin - Madison
Street address 425 Henry Mall
City Madison
State/province WI
ZIP/Postal code 53706
Country USA
 
Platforms (1)
GPL16109 Illumina Genome Analyzer IIx (Escherichia coli str. K-12 substr. MG1655star)
Samples (9)
GSM1010219 FNR IP ChIP-seq Anaerobic A
GSM1010220 FNR IP ChIP-seq Anaerobic B
GSM1010221 σ70 IP ChIP-seq Aerobic A
This SubSeries is part of SuperSeries:
GSE41195 Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding
Relations
BioProject PRJNA176149
SRA SRP015911

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41187_RAW.tar 136.2 Mb (http)(custom) TAR (of WIG)
Raw data are available in SRA
Processed data provided as supplementary file

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