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Series GSE40540 Query DataSets for GSE40540
Status Public on Sep 12, 2012
Title IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers
Organism Mus musculus
Experiment type Methylation profiling by genome tiling array
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Contributor(s) Thomson JP, Meehan RR, Lempiäinen H, Hackett J, Moggs JG, Müller A
Citation(s) 23598998, 23034186
Submission date Aug 31, 2012
Last update date Mar 19, 2019
Contact name John Paterson Thomson
E-mail john.thomson@igmm.ed.ac.uk
Organization name University of Edinburgh
Department MRC Human Genetics Unit
Lab Meehan
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platforms (6)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (153)
GSM995945 control mouse 1 liver 5hmC profile (28 d)
GSM995946 control mouse 2 liver 5hmC profile (28 d)
GSM995947 control mouse 3 liver 5hmC profile (28 d)
This SuperSeries is composed of the following SubSeries:
GSE40537 IP of 5-hydroxymethylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (28 day)
GSE40538 IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (28 day)
GSE40773 Dynamic changes in liver 5-hydroxymethylcytosine profiles upon non-genotoxic carcinogen exposure
Relations
BioProject PRJNA174858

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40540_RAW.tar 7.0 Gb (http)(custom) TAR (of BEDGRAPH, CEL, PAIR)

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