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Series GSE39881 Query DataSets for GSE39881
Status Public on Sep 04, 2012
Title Lgr5+ve stem cells in nephrogenesis
Organism Mus musculus
Experiment type Expression profiling by array
Summary Multipotent stem cells and their lineage-restricted progeny drive nephron formation within the developing kidney. Validated markers of these early stem/progenitor populations are essential for deciphering their in vivo function and for evaluating their clinical potential for treating adult kidney disease. Here, we document expression of the adult stem cell marker Lgr5 in the developing kidney and assess the stem/progenitor identity of Lgr5+ve cells via in vivo lineage tracing. The appearance and localization of Lgr5+ve cells coincided with that of the S-shaped body around E14. Lgr5 expression remained restricted to cell clusters within developing nephrons in the cortex until P7, when expression was permanently silenced. In vivo lineage tracing identified Lgr5 as a marker of a novel progenitor population within nascent nephrons dedicated to generating the thick ascending limb of Henle's loop and distal convoluted tubule. The Lgr5 surface marker and experimental models described here will be invaluable for deciphering the contribution of early nephron stem cells to developmental defects and for isolating human nephron progenitors as a prerequisite to evaluating their therapeutic potential.
 
Overall design Metanephric kidneys of timed pregnancies of ~14 days of gestation were harvested and cultured for ~10 days. Lgr5-EGFP-Ires-CreERT2-positive embryonic kidneys were identified by fluorescence microscopy and enzymatically digested to a single cell solution. GFPhi and GFPneg cells were sorted by flow cytometry (MoFlo; Dako). RNA, isolated using RNeasy (Qiagen), was analyzed using the Affymetrix platform.
 
Contributor(s) Rookmaaker M, Barker N, van de Wetering M, Clevers H
Citation(s) 22999937
Submission date Aug 03, 2012
Last update date Apr 18, 2017
Contact name Richard Volckmann
E-mail(s) r.volckmann@amsterdamumc.nl
Organization name Academic Medical Centre, University of Amsterdam
Department Department of Oncogenomics
Street address P.O. Box 22700
City Amsterdam
ZIP/Postal code 1100DE
Country Netherlands
 
Platforms (1)
GPL11533 [MoGene-1_1-st] Affymetrix Mouse Gene 1.1 ST Array [transcript (gene) version]
Samples (4)
GSM980666 Kidney A Lgr5 pos
GSM980667 Kidney B Lgr5 neg
GSM980668 Kidney B Lgr5 pos
Relations
BioProject PRJNA171932

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39881_RAW.tar 18.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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