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Series GSE39429 Query DataSets for GSE39429
Status Public on Dec 03, 2012
Title Rice global gene expression profile in response to plant hormones
Platform organism Oryza sativa
Sample organism Oryza sativa Japonica Group
Experiment type Expression profiling by array
Summary A time course gene expression profiling of rice treated with various plant hormones (abscisic acid, gibberelin, auxin, brassinosteroid, cytokinin and jasmonic acid) was performed to obtain an overall signature of the rice transcriptome in response to each phytohormone.
 
Overall design The transcriptome of rice seedlings treated with various plant hormones such as abscisic acid (ABA), gibberellic acid 3 (GA3), indole-3-acetic acid (IAA), brassinolide (BL), trans-zeatin (tZ), and jasmonic acid (JA) was characterized by microarray analysis. Seven-day old seedlings were transferred in culture solutions with specific hormones and in culture solution without hormone to serve as control (mock treatment). Root samples were collected and analyzed in three replicates at pretreatment (control) and after 15 min, 30 min, 1 h, 3 h and 6 h incubation in culture solutions with each hormone. Shoot samples were collected and analyzed in two replicates at pretreatment (control) and after 1 h, 3 h, 6 h and 12 h incubation culture solutions with each hormone. A total of 93 microarray data for root and 50 microarray data for shoot were obtained.
 
Contributor(s) Sato Y, Takehisa H, Antonio B, Namiki N, Nagamura Y
Citation(s) 23180765, 23180784
Submission date Jul 17, 2012
Last update date Dec 06, 2012
Contact name Yutaka Sato
E-mail(s) satoyu@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL6864 Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version)
Samples (143)
GSM968542 Root_Pretreatment_0 min_rep1
GSM968543 Root_Pretreatment_0 min_rep2
GSM968544 Root_Pretreatment_0 min_rep3
Relations
BioProject PRJNA170876

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39429_RAW.tar 2.0 Gb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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