|
| Status |
Public on Jul 15, 2013 |
| Title |
Synergistic interactions between CLAMP and MSL complex facilitate Drosophila dosage compensation |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
ChIP-seq and mRNA-seq experiments were performed to understand the role of the CLAMP protein in dosage compensation
|
| |
|
| Overall design |
ChIP-seq experiments compared the binding profiles of CLAMP in male and female cells and mRNA-seq data to define the role of CLAMP in regulating genes on the X-chromosome
|
| |
|
| Contributor(s) |
Larschan E, Bishop E |
| Citation(s) |
23873939 |
| |
| Submission date |
Jul 11, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Erica Larschan |
| E-mail(s) |
Erica_Larschan@brown.edu
|
| Organization name |
Brown University
|
| Street address |
185 Meeting St.
|
| City |
Providence |
| ZIP/Postal code |
02912 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
|
| Samples (15)
|
| GSM959255 |
CLAMP ChIP Kc cells control RNAi replicate 1 Input |
| GSM959256 |
CLAMP ChIP Kc cells control RNAi replicate 1 |
| GSM959257 |
CLAMP ChIP Kc cells control RNAi replicate 2 Input |
| GSM959258 |
CLAMP ChIP Kc cells control RNAi replicate 2 |
| GSM959259 |
CLAMP ChIP SL2 cells MSL2 RNAi replicate 1 Input |
| GSM959260 |
CLAMP ChIP SL2 cells MSL2 RNAi replicate 1 |
| GSM959261 |
CLAMP ChIP SL2 cells MSL2 RNAi replicate 2 Input |
| GSM959262 |
CLAMP ChIP SL2 cells MSL2 RNAi replicate 2 |
| GSM959263 |
CLAMP ChIP SL2 cells control RNAi replicate 1 Input |
| GSM959264 |
CLAMP ChIP SL2 cells control RNAi replicate 1 |
| GSM959265 |
CLAMP ChIP SL2 cells control RNAi replicate 2 Input |
| GSM959266 |
CLAMP ChIP SL2 cells control RNAi replicate 2 |
| GSM959267 |
mRNA-seq CLAMP RNAi SL2 |
| GSM959268 |
mRNA-seq Control RNAi SL2 |
| GSM959269 |
mRNA-seq MSL2 RNAi SL2 |
|
| Relations |
| BioProject |
PRJNA170445 |
| SRA |
SRP014195 |
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