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Series GSE38820 Query DataSets for GSE38820
Status Public on Dec 04, 2012
Title Transcriptome profiling of SOD1 mutant ALS model motor neurons.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Recent genetic studies of ALS patients have identified several forms of ALS that are associated with mutations in RNA binding proteins. In animals or cultured cells, such defects broadly affect RNA metabolism. This raises the question of whether all forms of ALS have general effects on RNA metabolism. We tested this hypothesis in a mouse model of ALS that is transgenic for a human disease-causing mutation in the enzyme superoxide dismutase 1 (SOD1). We analyzed RNA from laser-captured spinal cord motor neuron cell bodies of the mutant SOD1 strain, comparing the RNA profile with that from a corresponding wild-type SOD1 transgenic strain. We prepared the samples from animals that were presymptomatic, but which manifested abnormalities at the cellular level that are seen in ALS, including aggregation of the mutant protein in motor neuron cell bodies and defective morphology of neuromuscular junctions, the connections between neuron and muscle. We observed only minor changes in the level and splicing of RNA in the SOD1 mutant animals as compared with wild-type, suggesting that mutant SOD1 produces the toxic effects of ALS by a mechanism that does not involve global RNA disturbance.
 
Overall design RNA-Seq of laser microdissection of motor neuron bodies from two biological replicates each of SOD1 YFP (wildtype 592) and SOD1 G85R YFP (737) transgenic mice.
 
Contributor(s) Cotney J, Fenton W, Horwich A
Citation(s) 23301088
Submission date Jun 19, 2012
Last update date Jun 21, 2017
Contact name Justin Cotney
E-mail cotney@uchc.edu
Organization name UConn Health
Department Genetics and Genome Sciences
Lab Cotney Lab
Street address 400 Farmington Ave.
City Farmington
State/province CT
ZIP/Postal code 06030-6403
Country USA
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (4)
GSM950278 wildtype_592_mRNA_seq_rep1
GSM950279 wildtype_592_mRNA_seq_rep2
GSM950280 G85R_737_mRNA_seq_rep1
Relations
BioProject PRJNA169087
SRA SRP013849

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38820_RAW.tar 884.0 Mb (http)(custom) TAR (of BW, TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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