GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE38684 Query DataSets for GSE38684
Status Public on Nov 30, 2012
Title Chromatin Looping of Normal and Cancerous Prostate Cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Mapping the locations of the DNA binding protein CTCF genome-wide to assess its colocalisation with expression domain boundaries.
Overall design One PrEC sample, a normal cell line. One LNCaP sample, a cancer cell line.
Contributor(s) Statham A
Citation(s) 23245995
Submission date Jun 13, 2012
Last update date May 15, 2019
Contact name Aaron Statham
Organization name Garvan Institute of Medical Research
Department Cancer Department
Lab Epigenetics Research Laboratory
Street address 384 Victoria St
City Darlinghurst
State/province NSW
ZIP/Postal code 2010
Country Australia
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM947527 PrEC Cells CTCF ChIP-seq
GSM947528 LNCaP Cells CTCF ChIP-seq
This SubSeries is part of SuperSeries:
GSE38685 Normal and Cancerous Prostate Cells
BioProject PRJNA168465
SRA SRP013729

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38684_RAW.tar 910.5 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap